These almond flour lemon poppy seed muffins are fluffy and moist, sweet and tangy. Made with almond flour, sweetened by maple syrup and packed with bright lemon flavors, they are the perfect spring breakfast recipe.

A batch of keto lemon poppy seed muffins with coconut icing on top. These healthy easy muffins are the perfect spring recipe.

Drizzled with sweet and light coconut butter icing, these gluten-free lemon poppy seed muffins are perfect for a light breakfast, snack or even dessert!

Spring is in full bloom here.

I have been digging all the spring vibes, fun colors, light flavors and getting outdoors (now I am a month postpartum).

These almond flour lemon poppy seed muffins are just perfect for this time of the year or all year-round.

They are light and bright, made with almond flour and sweetened by maple syrup, they are the perfect muffin recipe to add to your breakfast routine or you can even enjoy them as a snack or dessert.

A batch of freshly baked keto lemon poppyseed muffins with a spoon drizzling low sugar coconut butter icing on top.

Ingredients For Lemon Poppy Seed Muffins

These muffins are made with simple, clean ingredients, most of which you probably already have on hand!

Dry Ingredients:

  • Almond flour
  • Tapioca flour
  • Baking soda
  • Poppy seeds

Wet ingredients:

  • Eggs, room temp
  • Maple syrup
  • Lemon juice, freshly squeezed
  • Lemon zest
  • Coconut oil, melted (room temp)
  • Vanilla extract

Icing Ingredients:

  • Coconut butter
  • Maple syrup
  • Lemon juice (optional)

Note: the icing will be less smooth if you add the lemon juice.

How to Make Almond Flour Lemon Poppy Seed Muffins

Step by step instruction on how to make the best healthy lemon poppy seed muffins in a bowl.

First, preheat oven to 350F.

In a large bowl, whisk together the almond flour, tapioca flour, and baking soda, until there are no clumps.

Sifting the dry ingredients will help to ensure that no clumps are present.

Step by step instruction on how to make the best healthy lemon poppy seed muffins in a bowl.

Next, wash the skins of the lemons and zest one lemon (about 1 Tbsp of zest), set aside.

Cut the lemon in half and squeeze to juice (remove seeds if needed). I love using this lemon juicer for quick and easy juicing.

Then, in a separate bowl, mix together the eggs, maple syrup, lemon juice, coconut oil and vanilla extract.

Step by step instruction on how to make the best healthy lemon poppy seed muffins in a bowl.

Combine the wet and dry ingredients and gently mix with a spatula.

Fold in lemon zest and poppy seeds.

lastly, scoop the lemon poppy seed muffin batter into a lined muffin pan.

Bake at 350F for 18-20 minutes, or until a toothpick comes out clean when inserted into the middle.

Once muffins are cooling, prepare the icing by melting the coconut butter and maple syrup. Mix in the lemon juice at the end, if using.

Drizzle the icing on top of the muffins once they are cooled.

Note: I tried adding 1 tsp of lemon juice in the icing and it was absolutely delicious, but it made the texture a bit more clumpy rather than smooth once it sat for a couple of minutes.

It didn’t bother me, but I just wanted to make a note of it here in case you decide to add the lemon juice so you didn’t think anything was wrong with your icing!

How to Store Lemon Poppy Seed Muffins

A batch of healthy lemon poppy seed muffins on a plate. There is lemon coconut icing on top of these healthy muffins. There is a bite in the muffins and the texture appears to be fluffy and moist.

You can keep these muffins covered at room temperature for 2-3 days, or in the fridge for up to 5 days.

Freezer friendly?

You know it! These babies will stay good in the freezer for up to 2 months so feel free to meal prep some extras, my friends!

They are perfect for meal prep so you have extra snacks for the kiddos, lunches, breakfasts, or even dessert.

They’re pretty much good for everything.

What’s your favorite lemon and poppy seed recipe? Leave a comment below!

I LOOK FORWARD TO SEEING YOUR CREATIONS! YOU CAN USE “TRIED IT” ON PINTEREST OR SHARE ON INSTAGRAM BY TAGGING #SHUANGYSEATS

A batch of gluten-free lemon poppyseed muffins on a cooling rack. There is coconut icing on the healthy lemon poppyseed muffins.

Get the recipe:Lemon Poppy Seed Muffin (with Almond Flour)

Made with almond flour, sweetened by maple syrup and packed with bright lemon flavors, they are the perfect spring breakfast recipe.
4.86 stars (7 reviews)
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Ingredients

Dry Ingredients

  • 2 1/4 cups almond flour, packed
  • 1/4 cup tapioca flour
  • 1 tsp baking soda

Wet Ingredients

  • 3 eggs, room temp
  • 1/3 cup maple syrup **
  • 1/3 cup fresh lemon juice, 2 large lemon juiced
  • 1/3 cup coconut oil melted, room temp
  • 2 tsp vanilla

Fold-ins

  • 1 lemon zested, ~1 tbsp
  • 2 tbsp poppy seeds

Icing

  • 3 tbsp coconut butter, melted, room temp
  • 1 tbsp maple syrup **
  • 1 tsp lemon juice, optional *

Instructions 

  • Preheat oven to 350F.
  • In a large bowl, whisk together the almond flour, tapioca flour, and baking soda, until there are no clumps. Sifting the dry ingredients will help to ensure that no clumps are present.
  • Wash and dry the skins of the lemons and zest one lemon (about 1 Tbsp of zest), set aside. Cut the lemon in half and squeeze to juice (remove seeds if needed).
  • In a separate bowl, mix together the eggs, maple syrup, lemon juice, coconut oil, and vanilla extract. Combine the wet and dry ingredients together. Gently mix with a spatula.
  • Fold in lemon zest and poppy seeds.
  • Scoop lemon poppy seed muffin batter into a lined muffin pan.
  • Bake for 18-20 minutes, or until the top is slightly domed and a toothpick comes out clean when inserted into the middle.

Notes

** Use keto-compliant liquid sweetener to make these Keto Lemon Poppy Seeds Muffins.
Serving: 1g, Calories: 301kcal, Carbohydrates: 19g, Protein: 8g, Fat: 25g, Saturated Fat: 10g, Polyunsaturated Fat: 13g, Cholesterol: 56mg, Sodium: 152mg, Fiber: 4g, Sugar: 10g

The Nutrition Facts above are specific to the ingredients I chose to use for this recipe, which may vary.